10 Viruses
Introduction
1
Methods
1.1
Light Microscopy
1.2
Fluorescence Light Microscopy
1.3
Scanning Electron Microscopy
1.4
Transmission Electron Microscopy
1.5
Cryogenic Electron Microscopy
1.6
Cryogenic Electron Tomography
1.7
Sub-Tomogram Averaging
1.8
Single Particle Reconstruction
1.9
X-Ray Crystallography
1.10
Putting It All Together
1.11
Summary
2
Cells
2.1
Membrane
2.2
Cell Wall
2.3
Outer Membrane
2.4
Vesicles
2.5
Classification Exceptions
2.6
Surface Layer
2.7
Surface Layer Variety
2.8
Sheath
2.9
DNA
2.10
Nucleoid
2.11
Summary
3
Shape
3.1
Coccoid
3.2
Rod
3.3
Length
3.4
Vibrioid
3.5
Helical
3.6
Prosthecate
3.7
Square
3.8
Summary
4
Growth
4.1
Stalk Bands
4.2
Nanowires
4.3
Intracytoplasmic Membrane
4.4
Enzyme Filaments
4.5
Microcompartments
4.6
Carboxysomes
4.7
Bacterial Storage Granules
4.8
Storage Granule Variety
4.9
Archaeal Storage Granules
4.10
Summary
5
Division
5.1
Copy Number
5.2
Fission
5.3
Budding
5.4
Monoderm Septum
5.5
Monoderm Cytokinesis
5.6
Diderm Cytokinesis
5.7
Outer Membrane Constriction
5.8
Asymmetric Division
5.9
Asynchronous Constriction
5.10
FtsZ
5.11
Archaeal Cytokinesis
5.12
Cdv
5.13
Summary
6
Motility
6.1
Flagellum
6.2
Flagellar Motor
6.3
Flagellar Assembly
6.4
Flagella Patterns
6.5
Peritrichous Flagella
6.6
Sheathed Flagella
6.7
Periplasmic Flagella
6.8
Archaellum
6.9
Archaella Patterns
6.10
Type IV Pilus
6.11
Type IX Secretion System
6.12
Terminal Organelle
6.13
Summary
7
Navigation
7.1
Chemotaxis
7.2
Chemosensory Arrays
7.3
Chemosensory Array Conservation
7.4
Chemoreceptor Variety
7.5
Cytoplasmic Chemosensory Arrays
7.6
Magnetotaxis
7.7
Summary
8
Lifecycle
8.1
Stationary Phase
8.2
Genome Protection
8.3
Archaeal Stationary Phase
8.4
Differentiation
8.5
Monoderm Sporulation
8.6
Monoderm Spore Engulfment
8.7
Monoderm Spores
8.8
Monoderm Germination
8.9
Diderm Sporulation
8.10
Diderm Spore Engulfment
8.11
Diderm Germination
8.12
Summary
9
Interaction
9.1
Biofilm
9.2
Biofilm Matrix
9.3
Type II and Type IV Secretion
9.4
Type III Secretion
9.5
Type V Secretion
9.6
Type VI Secretion
9.7
Contractile Weapons
9.8
Type IX Secretion
9.9
Predation
9.10
Predator Entry
9.11
Predator Replication
9.12
Summary
10
Viruses
10.1
Phage
10.2
Contractile Tails
10.3
Noncontractile Tails
10.4
Structural Variation
10.5
Targeting
10.6
Head Fibers
10.7
Replication
10.8
Virus-Associated Pyramids
10.9
Pyramid Release
10.10
Cellular Defense
10.11
Summary
Outlook
Keep Looking
Appendix
A
Feature Index
B
Scientist Profiles
C
Phylogenetic Tree
D
References
About This Book
© 2022 Caltech Library
Offline Version
“Phages are the winners in the game of life.”
- Forest Rohwer [
91
]
Chapter 10
Viruses
